PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000688613
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 465aa    MW: 51335.6 Da    PI: 9.821
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000688613genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05628123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  MDP0000688613  6 FVCEICNKGFQRDQNLQLHRRGH 28
                   89*******************88 PP

2zf-C2H212.90.0003482104123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H +t+
  MDP0000688613  82 WKCEKCSKKYAVQSDWKAHSKTC 104
                    58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.27E-7528No hitNo description
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PfamPF121717.3E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551004777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.27E-777102No hitNo description
SMARTSM0035514082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAKNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKSRLNK EVKKKVYICP EKTCVHHDPS  60
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK  120
DSFITHRAFC DALTEESARL ATSSVAGAPT NLNFGNDAML NNPMMNNSQX VVQDVSQISM  180
QYEQGLMRQD FNVLDQLHQH EKSRLSLWLN QQANSNSNQI NLMDDMQANP NHPLYVTSSS  240
SNTFPEMVQM PSSSNNVNLF GSSDSMSTFG ASTRGXNLSL SPVQESGXKK LIGNNSNLVG  300
SSXSKPPXAP MSATALLQKA AQSGSTRSSN NQGSSLGVNV MSSSSFSNTL MGFSNLNQDR  360
SNELHXFVQN AXQXGGXSAN LSSLTSSSSH TSSTTLEQLM NTIQRGSKNI GTIDRQNSPT  420
RDFLGMGGGA XDHADQLSHN NRQMFFPQDL AKFXSSMSQF TSNH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.227820.0bud| fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008387606.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ9LVQ71e-102IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLM5W7D30.0M5W7D3_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s13130.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.13e-86C2H2-like zinc finger protein